Cause Sclerotinia sclerotiorum, a fungus that produces hard, black sclerotia, which can survive many years in soil. Sclerotia germinate best when soil temperature is 55°F to 60°F. The fungus can colonize dead organic plant matter and survive many years. As a rule, these plants tend to be susceptible to overwatering. In the potato system, flowers are very susceptible to infection and are the main source of stem infection.