Cause A fungus, Sclerotinia trifoliorum, that can affect alfalfa, birdsfoot trefoil, crown vetch, and clover. The fungus produces small, black sclerotia within infected tissue and these will fall to the soil. During the fall or winter, the sclerotia produce small mushroom-like structures called apothecia. The apothecia produce spores (ascospores) that are blow by wind to susceptible plants. Plants of all ages are susceptible and colonized by the fungus.